.. toctree::
   :maxdepth: 2
   :numbered:

   index.md

   code_of_conduct.md

   atmosphere_cloud.md

   bash_lesson_1.md

   bash_lesson_2.md

   bioconda_lesson.md

   workflow_overview.md

   quality_control.md

   trimming.md

   variant_calling.md

   automation.md

   snakemake_basic.md

   advanced_atmosphere.md